Biology HL's Sample Internal Assessment

Biology HL's Sample Internal Assessment

Inhibition of catechol oxidase enzyme in bananas by heavy metals

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Table of content

Research question

Does varying concentrations of the heavy metal solution lead ethanoate (0% , 1% , 2% , 3% , 4% , 5%) effect the rate of enzyme activity of catechol oxidase in Musa acuminata Cavendish(bananas), measured using optical density ?

Introduction

Growing up chopped apples were a regular in my snack box and at the end of the day it would return looking exactly like how it looked when it was packed in the morning , as I found the brown apples to be unappetizing and so I would ask her to pack the fruit whole so I could enjoy it . One day I was eating some chopped apples and they tasted sour but they looked perfectly alright and I found out that if you squeezed some lime on them it would stop them from browning. This intrigued me. I wondered what else would help stop this browning process and what exactly caused the browning .

 

Growing up in Kerala , bananas were a native fruit and I noticed a similar browning in them too except it took much longer . During middle school I came to learn that this process was due to an enzyme-substrate reaction that took place in the presence of oxygen and it helped protect the fruit from getting spoiled. I wondered what else would slow down this enzyme activity apart from enzyme concentrations , substrate concentrations and extreme temperatures and pH. This is when I stumbled across the idea of inhibitors and the different types of inhibitors ranging from competitive , non-competitive , reversible and irreversible. I found this extremely fascinating.

Investigation

Background knowledge

Catechol oxidase is an enzyme found in plant tissues . It oxidizes (process of removal of hydrogen) its substrate catechol which is also found within the plant . Under normal conditions both catechol and catechol oxidase do not come together. However , when a plant cell is damaged catechol oxidase is released and comes in contact with its substrate catechol (colorless compound) in the presence of oxygen to form benzoquinone (orange compound) which is the compound that causes the brown color.

This benzoquinone is toxic to bacteria and helps prevent and slow down the decay within the damaged plant tissue .Heavy metals act as competitive inhibitors and are reversible inhibitors . The heavy metal competes with the substrate catechol to bind to the active site of the enzyme catechol oxidase and can even bind in between an enzyme-substrate complex. This binding is however reversible sosome substrate molecules will eventually bind to the active site of the enzyme and be converted to its product. In case of a reversible inhibitor once removed it will allow the enzyme’s active site to bind with the substrate ,catechol, as the conformation of the active site remains the same unlike irreversible competitive inhibitors. Heavy metals inhibit enzymatic activity by reacting with the S-H group of cysteine bonds,forming a covalent bond with sulfur atom and displacing the hydrogen ion.This causes the enzyme to loses it ability to catalyze reactions. I chose to use lead as my source of heavy metal as lead compounds are much less toxic in comparison to other heavy metal compounds and are easier to dispose safely.

 

Catechol oxidase being an enzyme its activity is inhibited by heavy metals (lead ethanoate) which are toxic in nature . The heavy metal binds to the active site resulting in the formation of fewer enzyme-substrate complexes , hence reducing rate of enzyme activity. As a result the browning effect reduces.

 

Catechol oxidase is a photochemical belonging to the class of polyphenol oxidase. It behaves as an enzyme in the process of oxidizing aromatic compounds especially bi phenolic rings to quinines which finally polymerises to form melanin pigments in cut fruits and plants. In plants they are mainly found within the chloroplasts and are often released during ripening stage. Catechol oxidase is mainly responsible for the dark brown colouration of fruits and vegetables which often leads to loss of nutrients.

 

The term heavy metals used here refers to certain specific metals in particular like Lead, silver, Copper and Arsenic. These metals are poisonous and are found to behave as non competitive inhibitors for certain enzymes. They bind to the enzyme in a site other than the active site. As a result, the shape of the active site of the enzyme changes and it is no longer capable to bind the substrate.

 

The basic aim of the investigation is to measure the effect of concentration of lead ( as heavy metal) on the catalytic activity of catechol oxidase. Catechol oxidase oxidizes catechol, a colourless product into a brown coloured compound called benzoquinone. This brown coloured compound polymerizes to form a brown pigment known as melanin.

Figure 2

The development of orange colour is the main tool to monitor the rate or effectiveness of this reaction. As the enzyme becomes more effective, more substrates (catechol) oxidizes to benzoquinone and thus more melanin is formed. Hence the orange colour formed gets deeper. The intensity of orange colouration can easily be measured using the optical density. Higher the optical density, more the amount of benzoquinone formed and thus more the effectiveness of the enzyme catechol oxidase.

Hypothesis

Null hypothesis -

The activity of catechol oxidase has no correlation with the concentration of heavy metal solution (Lead ethanoate) used.

 

Alternate hypothesis -

The activity of catechol oxidase bears a correlation with the concentration of heavy metal solution (Lead ethanoate). The correlation is not an outcome of a random error.

Variables

Independent VariableHow it was varied ?
Concentration of lead ethanoate

Different solutions of 1%,2%,3%,4% and 5% were prepared by weighing the appropriate amount of lead ethanoate and stirring it into 100 cm3 of distilled water.

Figure 3 - Table On Independent Variable

Dependent VariableHow it was measured ?
The optical density of the solution will be measured as an indication of the intensity of the orange coloured benzoquinone formed. The browning as indicated by the values of optical density will be used to elucidate the catalytic activity of the enzyme.Measured using a colorimeter which measures the amount of a monochromatic light transmitted through a sample. The amount of light absorbed appears as optical density and is directly related to the concentration of the coloured compound (chromophore) in the analyte sample.

Figure 4 - Table On Dependent Variable

Control VariableEffect on experimentHow it was controlled ?
Variety of bananaDifferent varieties of bananas have different nutritional composition and can therefore have varying amounts of the enzyme catechol oxidase.Using same variety of banana sourced from the same farm. The scientific name of the variety of bananas used in the following experiment is Musa acuminata Cavendish Subgroup.
Ripeness of bananaAffects the rate of enzyme activity and hence will affect the intensity of the yellow color measured using colourimeter giving inconsistent readings.Bananas were left to ripen covered in paper for 24 hours to help ensure almost the same amount ripeness.
Volume of catecholIncreased volume of catechol would lead to increased substrate concentration ,higher enzyme activity and vice versa.

Volume of catechol (substrate) was kept constant at 1 cm3.

Volume of catechol oxidase (Banana mixture)Increased volume of catechol oxidase would lead to increased enzyme concentration ,higher enzyme activity and vice versa.

Volume of catechol oxidase (enzyme) was kept constant at 1 cm3.

Volume of lead ethanoateVarying volumes of lead ethanoate would lead to higher or lower concentrations of lead ethanoate molecules which would increase or decrease optical density values as rate of enzyme activity would vary.

Volume of the varying concentrations of Lead ethanoate was kept constant in all test tubes at 1 cm3.

pHVarying pH affects rate of enzyme activity.The optimum pH of the enzyme is 7. Therefore, pH that are too low could result in slower enzyme activity while pH that is too high would distort the confrontation of the active site on the enzyme reducing rate of enzyme activity.pH was kept constant using a buffer of pH 7 which is the optimum pH for the particular enzyme. Volume of pH 7 buffer was kept constant at 5ml and was tested using pH paper to ensure pH remained at 7 in all test tubes.
Source of heavy metalDifferent sources and compounds of the heavy metal lead would dissociate into varying amount of lead ions.Lead ethanoate crystals were used from the same source which was then dissolved in distilled water.
Resting time for reaction to take placeIf left to rest for varying amounts of time the rate of the enzyme activity would vary greatly giving inaccurate optical density values.All test tubes were rested for 10 minutes using a stopwatch and then readings were taken. Each test tube was done individually to ensure reaction was allowed to continue for 10 minutes before readings were recorded.
TemperatureVarying temperature affects the rate of enzyme activity.At temperature below the optimum there is not enough kinetic energy to form enzyme substrate complexes hence rate of enzyme activity would be lower whereas at temperatures beyond the optimum the shape of the active site on the enzyme is denatured hence enzyme- substrate complexes would not form and rate of enzyme activity would decrease.Temperature was kept constant at 30 degrees using a water bath.

Figure 5 - Table On Control Variable

Procedure

Apparatus

Figure 6 - Table On Apparatus/Materials

Figure 7 - Table On Materials Required

Methodology

Buffer solution (pH 7) preparation

  • 4.20 g of powdered citric acid was weighed and placed into a beaker.
  • 220 cm3 of distilled water was measured using a measuring cylinder and transferred into the beaker and stirred with a glass rod to form 0.1 M citric acid.
  • 19.31 g of powdered disodium hydrogen phosphate was weighed and placed into a beaker.
  • 680 cm3 of distilled water was measured using a measuring cylinder and transferred into the beaker and stirred with a glass rod to form 0.2 M disodium hydrogen phosphate.
  • 200 cm3 of 0.1 M citric acid, 680 cm3 of 0.2 M disodium hydrogen phosphate and 220 cm3 of distilled water was mixed to form pH 7 buffer.
  • Buffer was stored in reagent bottles.

Catechol solution preparation

  • 1g of Catechol flakes was weighed and placed into a beaker.
  • 100 ml of distilled water was poured into a beaker and stirred to form 1% catechol solution.
  • Solution is sensitive to light hence it was stored in a reagent bottle in a dark cupboard.

Enzyme extraction

  • 8g of banana was weighed.
  • Banana was grinded using a blender to form a paste.
  • Mixture was strained through a muslin clothes to help remove seeds and clumps in the paste.
  • This is the source of the enzyme catechol oxidase.

Experimental procedure

  • 10 test tube was placed in test tube rack in a water bath at 30.0 °C.
  • 1 cm3 catechol solution was measured using a pipette and poured into the test tube.
  • 1 cm3 of the catechol oxidase solution was measured using a pipette and poured into the test tube.
  • 5 cm3 of the pH 7 buffer solution was measured in a 10 cm3 measuring cylinder and poured into the test tube.
  • 1 cm3 of the lead ethanoate solution was measured using a pipette and poured into the test tube.
  • Stopwatch was started and the test tube was allowed to rest for 10 minutes
  • Spectrometer was set to 450 nm wavelength (Orange).
  • Distilled water was poured into the cuvette and was used as a blank and was poured out.
  • After 10 minutes, the contents of the test tube was poured into the cuvette with the help of a funnel lined with filter paper.
  • Cuvette was placed into the spectrometer and the optical density value was recorded.
  • The process was repeated for 9 more trials for each concentration.
  • A control was done by following the steps above and omitting the 1 cm3 of Lead ethanoate solution.

Risk Assessment

ApparatusUse
GogglesTo prevent any chemicals from entering the eyes as it could cause irritation
GlovesTo prevent direct contact of chemicals onto the skin which could potentially irritate the skin and cause redness
Well ventilated areasTo prevent harmful fumes from the chemicals from entering the body
MaskTo prevent harmful fumes from entering the body
KnivesWhen cutting the banana it must be placed on a flat surface and fingers must be watched while cutting.

Figure 8 - Table On Apparatus

ConcernExplanationSolution
Lead (2) ethanoate is toxic as it is a heavy metal compoundIt cannot be washed off into the sink due to its toxicity and could contaminate the ground and cause severe lead poisoning to both humans and other animals . It is bioaccumulative .It was diluted and disposed into a container and then given to a licensed disposal company where it was processed and disposed safely
Disposal of used syringesIt comes under the category of biomedical wasteHence it was disposed separately through a local hospital or medical center
Citric acid is acidic and has a pH of 2.2It could make the soil in the site of disposal acidic which could affect the growth of plants in the affected soilIt was diluted carefully and then disposed
Catechol solution is toxic to fishes and other aquatic lifeIn strong concentrations it is proven to have a negative effect on aquatic lifeIt was responsibly diluted and disposed into a container and then given to a licensed disposal company where it was processed and disposed safely
Disodium hydrogen sulfate can give off sulfur dioxide gasSulfur dioxide gas is slightly toxicIt was responsibly diluted and disposed into a container and then given to a licensed disposal company where it was processed and disposed safely.

Figure 9 - Table On Concern

There are no ethical concerns in the following experiment.

Data Collection

Quantitative Raw data

Figure 10 - Table On Raw Data How The Optical Density Of Solution Changes As Concentration Of Lead Ethanoate Increases.

Qualitative data

Concentration of Lead Ethanoate/ %Description
0Darkest Orange
1Dark Orange
2Orange
3Light orange
4Lighter Orange
5Lightest Orange

Figure 11 - Table On Qualitative Data The Observations Made In Each Test Tube After The Experiment Was Carried Out.

The average values are calculated for each concentration by using the formula -

 

Average =  All trial values for a particular concentration÷ Number of trials(10)

Figure 12 - Table On Processed Data The Calculated Mean Values And Standard Deviation Values Of The Measured Optical Density As Concentration Of Lead Ethanoate Increases.

Figure 1 - Oxidation Of Catechol Using Catechol Oxidase To Orange Coloured Benzoquinone